Source code for pymc.blocking

#   Copyright 2020 The PyMC Developers
#   Licensed under the Apache License, Version 2.0 (the "License");
#   you may not use this file except in compliance with the License.
#   You may obtain a copy of the License at
#   Unless required by applicable law or agreed to in writing, software
#   distributed under the License is distributed on an "AS IS" BASIS,
#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#   See the License for the specific language governing permissions and
#   limitations under the License.


Classes for working with subsets of parameters.
from __future__ import annotations

from functools import partial
from typing import Any, Callable, Dict, Generic, List, NamedTuple, TypeVar

import numpy as np

from typing_extensions import TypeAlias

__all__ = ["DictToArrayBijection"]

T = TypeVar("T")
PointType: TypeAlias = Dict[str, np.ndarray]
StatsType: TypeAlias = List[Dict[str, Any]]

# `point_map_info` is a tuple of tuples containing `(name, shape, dtype)` for
# each of the raveled variables.
class RaveledVars(NamedTuple):
    data: np.ndarray
    point_map_info: tuple[tuple[str, tuple[int, ...], np.dtype], ...]

class Compose(Generic[T]):
    Compose two functions in a pickleable way

    def __init__(self, fa: Callable[[PointType], T], fb: Callable[[RaveledVars], PointType]):
        self.fa = fa
        self.fb = fb

    def __call__(self, x: RaveledVars) -> T:
        return self.fa(self.fb(x))

[docs]class DictToArrayBijection: """Map between a `dict`s of variables to an array space. Said array space consists of all the vars raveled and then concatenated. """
[docs] @staticmethod def map(var_dict: PointType) -> RaveledVars: """Map a dictionary of names and variables to a concatenated 1D array space.""" vars_info = tuple((v, k, v.shape, v.dtype) for k, v in var_dict.items()) raveled_vars = [v[0].ravel() for v in vars_info] if raveled_vars: result = np.concatenate(raveled_vars) else: result = np.array([]) return RaveledVars(result, tuple(v[1:] for v in vars_info))
[docs] @staticmethod def rmap( array: RaveledVars, start_point: PointType | None = None, ) -> PointType: """Map 1D concatenated array to a dictionary of variables in their original spaces. Parameters ========== array The array to map. start_point An optional dictionary of initial values. """ if start_point: result = dict(start_point) else: result = {} if not isinstance(array, RaveledVars): raise TypeError("`array` must be a `RaveledVars` type") last_idx = 0 for name, shape, dtype in array.point_map_info: arr_len =, dtype=int) var =[last_idx : last_idx + arr_len].reshape(shape).astype(dtype) result[name] = var last_idx += arr_len return result
[docs] @classmethod def mapf( cls, f: Callable[[PointType], T], start_point: PointType | None = None ) -> Callable[[RaveledVars], T]: """Create a callable that first maps back to ``dict`` inputs and then applies a function. function f: DictSpace -> T to ArraySpace -> T Parameters ---------- f: dict -> T Returns ------- f: array -> T """ return Compose(f, partial(cls.rmap, start_point=start_point))